Methylation/modified base calling separated from basecalling.
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Sep 17, 2024 - Python
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methylation
Here are 43 public repositories matching this topic...
Deep neural networks for predicting CpG methylation
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Sep 30, 2019 - Python
tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
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Jan 16, 2025 - Python
Detecting methylation using signal-level features from Nanopore sequencing reads
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Jun 4, 2023 - Python
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May 6, 2024 - Python
Detecting methylation using signal-level features from Nanopore sequencing reads of plants
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Jul 1, 2024 - Python
MethPhaser: methylation-based haplotype phasing of human genomes
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Jul 17, 2024 - Python
Python package to analyze DNA methylation data
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Nov 15, 2024 - Python
Python-based preprocessing software for Illumina methylation arrays
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Aug 17, 2023 - Python
A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.
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Sep 24, 2021 - Python
ENCODE whole-genome bisulfite sequencing (WGBS) pipeline
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Feb 15, 2022 - Python
BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool
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Mar 31, 2023 - Python
Mapping pipeline for snmC-seq based technologies.
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Sep 25, 2023 - Python
Python package with CLI for the analysis of single cell methylation data.
methylation single-cell dna-methylation single-cell-rna-seq single-cell-methylation dna-methylation-data
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Oct 29, 2024 - Python
An efficient, documented, reproducible Snakemake methylation analysis pipeline for BS-seq and EM-seq samples, including cfDNA.
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Jan 31, 2024 - Python
Comprehensive tool for visualizing genome-wide cytosine data.
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Dec 17, 2024 - Python
pyllelic: a tool for detection of allele-specific methylation variation in bisulfite DNA sequencing.
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Feb 29, 2024 - Python
Toolkit for concretely describing non-canonical DNA, RNA, and proteins
dna methylation epigenetics protein rna phosphorylation dna-damage proteoform post-transcriptional-regulation post-translational-modification crosslinks
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Oct 5, 2020 - Python
An open platform which provides information about miRNAs and genes from different popular databases
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Jan 2, 2025 - Python
GraphCpG: imputation of single-cell methylomes based on locus-aware neighboring subgraphs
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Dec 6, 2024 - Python
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